EDUCATION •
B.Sc., Hebrew University, Jerusalem, Israel 1993–1996,
Physics / Mathematics • Ph.D., University of Texas at
Austin, 1996–2003, Statistical Physics, Adviser: Linda E.
Reichl Thesis Title: Ferromagnetic properties of partially filled two-dimensional Ising lattices
EMPLOYMENT
HISTORY
• 2017-Now : Adjunct Professor, Department of Physics, Indiana
University Purdue University Indianapolis, Indianapolis, Indiana USA
• 2012-Now : Consultant, Battelle Center for Mathematical Medicine,
The Research Institute at Nationwide Children's Hospital, 700 Children's
Drive, Columbus, OH, USA
• 2012-Now : Physicist, Research and Information Systems, Carmel, Indiana USA
• 2012-2017 : Visiting Professor, Department of Biochemistry and Moleculaar Biology,
Indiana University School of Medicine, Indianapolis, Indiana USA
• 2007-2012 : Research Associate, Center for Computational Biology and Bioinformatics, School of Informatics,
Indiana University Purdue University, Indianapolis, Indiana USA
• 2003-2006 : Research
Associate, Department of Physics, Florida International
University, Miami, Florida USA
• 1999-2003 : Research
Assistant, Department of Physics, University of Texas, Austin, Texas
USA • 1996-2003 : Teaching Assistant, Department of
Physics, University of Texas, Austin, Texas USA
PUBLICATIONS
In preparation
- Eshel Faraggi, Tuo Zhang, Yaoqi Zhou, A. Keith Dunker and Andrzej
Kloczkowski, "The role of age and disorder in protein-protein
interactions".
- Eshel Faraggi, A. Keith Dunker, Robert Jernigan, and Andrzej
Kloczkowski, "Comparing sequence to structural entropy in related
proteins".
Forthcoming
- Eshel Faraggi, Robert Jernigan, and Andrzej Kloczkowski, "Scoring
protein models using a modified Levenberg Marquardt machine learner".
- Eshel Faraggi, Robert Jernigan, and Andrzej Kloczkowski, "Predicting the effect of missense mutations across species".
Published
- Basu, S., Zhao, B., Biro, B., Faraggi, E., Gsponer, J., Hu, G., ... & Kurgan, L. (2024). DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options. Nucleic Acids Research, 52(D1), D426-D433.
- Faraggi, E. (2022). There is only charge: Heisenberg-Coulomb based theory of the quarks, nucleons, and the nuclei. Authorea Preprints.
- Jernigan, R. L., Sankar, K., Jia, K., Faraggi, E., & Kloczkowski, A. (2021). Computational ways to enhance protein inhibitor design. Frontiers in Molecular Biosciences, 7, 607323.
- Faraggi, E., Jernigan, R. L., & Kloczkowski, A. (2021). A Hybrid Levenberg-Marquardt Algorithm on a Recursive Neural Network for Scoring Protein Models. Artificial Neural Networks, 307-316.
- Zhao, B., Katuwawala, A., Oldfield, C. J., Dunker, A. K., Faraggi, E., Gsponer, J., ... & Kurgan, L. (2021). DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Research, 49(D1), D298-D308.
- Kryshtafovych, A., Moult, J., Billings, W. M., Della Corte, D., Fidelis, K., Kwon, S., ... & CASP-COVID participants. (2021). Modeling SARS-CoV-2 proteins in the CASP\u2010commons experiment. Proteins: Structure, Function, and Bioinformatics, 89(12), 1987-1996.
- Faraggi, E., Dunker, A. K., Jernigan, R. L., & Kloczkowski, A. (2019). Entropy, Fluctuations, and Disordered Proteins. Entropy, 21(8), 764.
- Alterovitz, W. L., Faraggi, E., Oldfield, C. J., Meng, J., Xue, B., Huang, F., ... & Dunker, A. K. (2019). Many-to-one binding by intrinsically disordered protein regions. In PACIFIC SYMPOSIUM ON BIOCOMPUTING 2020 (pp. 159-170).
- Faraggi, E., and Kloczkowski, A. (2019). Protein Secondary
Structure Assignments and Their Usefulness for Dihedral Angle
Prediction. In Computational Methods to Study the Structure and Dynamics
of Biomolecules and Biomolecular Processes (pp. 699-712). Springer,
Cham.
- Keasar, Chen, et al. "An analysis and evaluation of the WeFold
collaborative for protein structure prediction and its pipelines in
CASP11 and CASP12." Scientific reports 8.1 (2018): 9939.
- Faraggi, E., Krupa, P., Mozolewska, M., Liwo, A., and
Kloczkowski, A. (2018). Reoptimized UNRES potential for protein model
quality assessment. Genes, 9(12), 601.
- Faraggi, E., Gerstman, B. S., and Kloczkowski, A. (2017). A
superposition test for the emergence of nonlinearities in a laser
irradiated spherical absorber. arXiv preprint arXiv:1711.02986.
- Faraggi, Eshel, A. Keith Dunker, Joel L. Sussman, and Andrzej
Kloczkowski. "Comparing NMR and X-ray protein structure: Lindemann-like
parameters and NMR disorder." Journal of Biomolecular Structure and
Dynamics (2017): 1-11.
- Faraggi, Eshel, and Andrzej Kloczkowski. "Accurate Prediction of
One-Dimensional Protein Structure Features Using SPINE-X." Prediction of
Protein Secondary Structure (2017): 45-53.
- Zhou, Yaoqi, Andrzej Kloczkowski, Eshel Faraggi, and Yuedong Yang,
eds. Prediction of Protein Secondary Structure. Springer New York, 2017.
- Faraggi, Eshel, Maksim Kouza, Yaoqi Zhou, and Andrzej Kloczkowski.
"Fast and Accurate Accessible Surface Area Prediction Without a Sequence
Profile." Prediction of Protein Secondary Structure (2017): 127-136.
- Kouza, Maksim, Girik Malik, Eshel Faraggi, Andrzej Kolinski, Irina
Buhimschi, and Andrzej Kloczkowski. "Prediction of Protein Aggregation
Propensities using GOR Method." Biophysical Journal 112, no. 3 (2017):
198a-199a.
- Kouza, Maksim, Eshel Faraggi, Andrzej Kolinski, and Andrzej
Kloczkowski. "The GOR Method of Protein Secondary Structure Prediction
and Its Application as a Protein Aggregation Prediction Tool."
Prediction of Protein Secondary Structure (2017): 7-24.
- Tuo Zhang, Eshel Faraggi, Zhixiu Li, and Yaoqi Zhou. "Intrinsic
Disorder and Semi-disorder Prediction by SPINE-D." Prediction of Protein
Secondary Structure (2017): 159-174.
- Eshel Faraggi and Andrzej Kloczkowski, "GENN: a GEneral Neural
Network for learning tabulated data with examples from protein structure
prediction." Artificial Neural Networks. Springer New York, 2015.
165-178.
- Faraggi, Eshel, Yaoqi Zhou, and Andrzej Kloczkowski. "Accurate
single-sequence prediction of solvent accessible surface area using
local and global features." Proteins: Structure, Function, and
Bioinformatics (2014).
- Eshel Faraggi, and Andrzej Kloczkowski. "A global machine learning
based scoring function for protein structure prediction." Proteins:
Structure, Function, and Bioinformatics 82, no. 5 (2014): 752-759.
- Li, Zhixiu, Yuedong Yang, Eshel Faraggi, Jian Zhan, and Yaoqi Zhou.
"Direct prediction of profiles of sequences compatible to a protein
structure by neural networks with fragment-based local and energy-based
nonlocal profiles." Proteins: Structure, Function, and Bioinformatics
(2014).
- Zhang, Tuo, Eshel Faraggi, Zhixiu Li, and Yaoqi Zhou.
"Intrinsically semi-disordered state and its role in induced folding and
protein aggregation." Cell biochemistry and biophysics 67, no. 3
(2013): 1193-1205.
- A. Kloczkowski, P. Gniewek, E. Faraggi, M. Zimmermann, D. Gront, M.
Pawlowski, R. L. Jernigan, and A. Kolinski, "New Methods to Improve
Protein Structure Prediction and Refinement". Biophys. J. 104, 229
(2013)
- J. Gao, E. Faraggi, Y. Zhou, J. Ruan and L. Kurgan, "BEST: Improved
Prediction of B-Cell Epitopes from Antigen Sequence", PLoS ONE 7(6):
e40104. doi:10.1371/journal.pone.0040104 (2012)
- T. Zhang*, E. Faraggi*, B. Xue, A. K. Dunker, V. N. Uversky and Y.
Zhou, "SPINE-D: Accurate prediction of short and long disordered regions
by a single neural-network-based method", J. Biomol. Struc. Dyn. 29,
799-813 (2012)
- E. Faraggi, T. Zhang, Y. Yang, L. Kurgan and Y. Zhou, "SPINE X:
Improving protein secondary structure prediction by multi-step learning
coupled with prediction of solvent accessible surface area and backbone
torsion angles", J. Comput. Chem. 33, 259-267 (2012)
- Eshel Faraggi, "Symmetrical charge-charge interactions in ionic
solutions: implications for biological interactions".
http://arxiv.org/abs/1201.0556 (2012)
- Y. Yang, E. Faraggi, H. Zhao and Y. Zhou, ''Improving protein fold
recognition and template-based modeling by employing probabilistic-based
matching between predicted one-dimensional structural properties of the
query and corresponding native properties of templates'' Bioinformatics
27, 2076-2082 (2011)
- Tuo Zhang, Eshel Faraggi, and Yaoqi Zhou, "Fluctuations of
backbone torsion angles obtained from NMR-determined structures and
their prediction". Proteins, 78, 3353-3362 (2010)
- Y. Zhou, D. Yuan, Y. Yang, E. Faraggi, H. Lei, "Trends in
template/fragment-free protein structure prediction" (Invited feature
article) Theor. Chem. Accounts, 128, 3-16 (2010)
- Yaoqi Zhou, and Eshel Faraggi;
"Prediction of one-dimensional structural properties of proteins by
integrated neural networks". Protein Structure Prediction: Method and
Algorithms , edited by H. Rangwala and G. Karypis, Wiley, (2010)
- Eshel Faraggi, Yuedong Yang, Shesheng Zhang, and
Yaoqi Zhou.
"Predicting Continuous Local Structure and the Effect of Its
Substitution for Secondary Structure in Fragment-Free Protein Structure
Prediction". Structure 17, 1515-1527 (2009)
- Bin Xue, Eshel Faraggi, and Yaoqi Zhou.
"Predicting residue-residue contact maps by a two-layer, integrated neural-network method". Proteins 76, 176-183 (2009)
- Eshel Faraggi, Bin Xue, and Yaoqi Zhou.
"Improving the prediction accuracy of residue solvent accessibility and
real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network". Proteins 74,
857-871 (2009)
- Eshel Faraggi, Daniel T. Robb.
"Locally converging algorithms for determining the critical temperature
in Ising systems". Physical Review B, 78(13) 134416 (2008)
- Bin Xue, Ofer Dor, Eshel Faraggi, and Yaoqi
Zhou. "Real-value prediction of backbone torsion angles". Proteins 72, 427-433
(2008)
- Eshel Faraggi, and Bernard S. Gerstman.
"Acoustical resonant absorption of pulsed laser radiation by a
spherical absorber". J. Appl. Phys. 102(12), 123505 (2007). Selected
for publication in the Virtual Journal of Biological Physics Research, Volume 15, Issue 1.
- Eshel Faraggi, Bernard S. Gerstman, and Jinming
Sun. "The emergence of nonlinear behavior and chaos in laser irradiated
spherical absorber". Chaos 17(1), 013101 (2007). Selected for
publication in the Virtual Journal of Biological Physics Research, Volume 13, Issue 3.
- Eshel Faraggi, "An electrostatic model for biological cell division". http://arxiv.org/abs/1006.3961 (2006)
- Eshel Faraggi, Bernard S. Gerstman, " Analyzing chaos in the pressure generated by
laser absorption by microparticles". Proceedings of the SPIE, Vol. 6436, pp. 643617 (2007)
- Eshel Faraggi, Linda E. Reichl, and Dan T. Robb.
"Magnetic behavior of partially filled finite Ising surfaces". Physical
Review B 74(1) 014407 (2006)
http://dx.doi.org/10.1103/PhysRevB.74.014407
- Eshel Faraggi. "Explicit solutions to
phenomenological models of magnetization reversal of thin ferromagnetic
films in the presence of a sawtooth magnetic field". Journal of
Magnetism and Magnetic Materials 303(1), 49 (2006)
http://dx.doi.org/10.1016/j.jmmm.2005.10.228
- Eshel Faraggi, Bernard S. Gerstman, "Resonant absorption in
nanometer gold spherical particles". Proceedings of the SPIE, Vol. 6084,
pp. 608405/1-12 (2006)
- Bernard S. Gerstman, Eshel Faraggi, and Jinming Sun, "Chaos in the
pressure generated by laser absorption by microparticles". Proceedings
of the SPIE, Vol. 6084, pp. 608406/1-8 (2006)
- Eshel Faraggi, Bernard S. Gerstman, and Jinming
Sun. "Biophysical Effects of Pulsed Lasers in the Retina and Other
Tissues with Strongly Absorbing Particles: Shockwaves and Explosive
Bubble Generation". Journal of Biomedical Optics 10, 64029 (2005)
- Corneliu Nistor, Eshel Faraggi, J. L. Erskine.
"Magnetic Energy Loss in Permalloy Thin Films and Microstructures".
Physical Review B 72, 014404 (2005)
- Eshel Faraggi, Shijun Wang, and Bernard Gerstman, "Stress
confinement, shock wave formation, and laser-induced damage".
Proceedings of the SPIE Vol. 5695, pp. 209-215 (2005)
- Eshel Faraggi, Bernard S. Gerstman, and Shijun Wang, "Response to
pulsed radiation by a spherical solid absorber immersed in a transparent
fluid". Proceedings of the SPIE Vol. 5696, pp. 101-109 (2005)
- Bernard S. Gerstman, Shijun Wang, and Eshel Faraggi, "Ab-Initio
Calculations for Shock Wave and Bubble Production with Gaussian Temporal
Laser Pulses". Proceedings of the SPIE, Progress in Biomedical Optics
and Imaging, Vol. 5319, pp. 217-223 (2004)
- Dan T. Robb, Linda E. Reichl, and Eshel
Faraggi. "Simulation of hysteresis in magnetic nanoparticles with Nose
thermostatting". Physical Review E 67(5), 056130 (2003)
- Eshel Faraggi, "Nonlinear behavior in Ferromagnetism: Simple
observations and possible implications".
http://arxiv.org/abs/nlin.SI/0209006 (2002)
Books
- Zhou, Yaoqi, Andrzej Kloczkowski, Eshel Faraggi, and Yuedong Yang,
eds. Prediction of Protein Secondary Structure. Springer New York, 2017.
-
Eshel Faraggi (ed.), "Protein Structure". Invited by INTECH Publications - Croatia (2012) ISBN 978-953-51-0555-8
-
Eshel
Faraggi, "My Adventures in Ferromagnetism: Properties of Partially
Filled Two-Dimensional Ising Systems". Invited by VDM Verlag - Germany
(2009) ISBN 978-3-639-15942-4
LECTURES/ABSTRACTS (Partial List) •
Eshel Faraggi, Linda E. Reichl, and Dan T. Robb, "Monte-Carlo
Simulations in Ferromagnetism: Semi-Filled Ising Surfaces".
American Physical Society, March 2002 meeting, Indianapolis,
Indiana. • Eshel Faraggi, "Nonlinear behavior in
Ferromagnetism: Simple Observations and possible implications".
American Physical Society, March 2002 meeting, Indianapolis,
Indiana. • Eshel Faraggi, Linda E. Reichl, and Dan T.
Robb, "Monte-Carlo Simulations in Ferromagnetism:
Semi-Filled Ising Surfaces". American Physical Society,
March 2003 meeting, Austin, Texas. • Eshel Faraggi, Linda
E. Reichl, and Dan T. Robb, "Locally converging algorithms
in two dimensional ferromagnetism". American Physical
Society, March 2003 meeting, Austin, Texas. • Eshel
Faraggi, "Ferromagnetic Properties of Partially Filled
Two-Dimensional Ising Lattices". Final oral defense, April
2003, University of Texas, Austin, Texas. • Bernard S.
Gerstman, Shijun Wang, and Eshel Faraggi, "Ab-Initio
Calculations for Shock Wave and Bubble Production with Gaussian
Temporal Laser Pulses". SPIE Photonics West, January 2004,
San Jose, California. • Eshel Faraggi, Bernard S.
Gerstman, and Shijun Wang, "Resonant Absorption".
Baltimore Meeting on Laser Safety, Baltimore, Maryland (March
2004) • Eshel Faraggi, "What is complexity?",
Seminars given at the physics departments of the Hebrew
University, Tel-Aviv University, Technion, Weizmann Institute of
Science, Bar-Ilan University, and Ben-Gurion University. Israel
(January 2005) • Eshel Faraggi, Bernard S. Gerstman, and
Shijun Wang, "Response to pulsed radiation by a spherical
solid absorber immersed in a transparent fluid". SPIE
Photonics West, January 2005, San Jose, California. •
Eshel Faraggi, Shijun Wang, and Bernard Gerstman, "Stress
confinement, shock wave formation, and laser-induced damage".
SPIE Photonics West, January 2005, San Jose, California.
•
Eshel Faraggi, "An electrostatic model for biological cell
division". Seminars given at the Hebrew University,
Jerusalem, Israel and at the Ben-Gurion University, Beer-Sheva,
Israel (January 2006)
• Eshel Faraggi, Bernard S.
Gerstman, "Resonant absorption in nanometer gold spherical
particles". SPIE Photonics West, January 2006, San Jose,
California. • Bernard S. Gerstman, Eshel Faraggi, and
Jinming Sun, "Chaos in the pressure generated by laser
absorption by microparticles". SPIE Photonics West, January
2006, San Jose, California. • Eshel Faraggi, Bernard S.
Gerstman, "Resonant absorption in micrometer and nanometer
absorbing particles". American Physical Society, March 2006
meeting, Baltimore, Maryland.
• Eshel Faraggi, “Scaling
of hysteresis in phenomenological models of thin ferromagnetic
films”. American Physical Society, March 2006 meeting,
Baltimore, Maryland.
• Eshel Faraggi, Bin Xue, Yaoqi Zhou, “Guided learning”. The Fifth
Annual Indy Regional Bioinformatics Conference, 2008, Indianapolis,
Indiana
• Eshel Faraggi, “Twin Peaks: identifying
the structure of the protein's dihedral angle distribution and its
implication for its prediction”. CCBB, IUPUI 2008, Indianapolis,
Indiana.
• Eshel Faraggi, Yaoqi Zhou, “A new level of accuracy for dihedral
angle prediction”. The Sixth Annual Indy Regional Bioinformatics
Conference, 2009, Indianapolis, Indiana
• Eshel Faraggi, Yaoqi Zhou, “A new level of accuracy for dihedral
angle prediction”. The Seventh Biotechnology and Bioinformatics
Symposium (BIOT-2009), Lincoln, Nebraska
• Eshel Faraggi, Yuedong Yang, Shesheng Zhang, and Yaoqi Zhou,
“Predicting Continuous Local Structure and the Effect of Its
Substitution for Secondary Structure in Fragment-Free Protein Structure
Prediction” From Computational Biophysics to Systems Biology meeting,
2010, Traverse City, Michigan
• Y. Yang, E. Faraggi, and Y. Zhou, “SPARKS-X: Improving the single
fold-recognition technique by employing statistical error potentials”
Critical Assessment of protein Structure Prediction 9, 2010, Pacific
Grove, California
• T. Zhang, E. Faraggi and Y. Zhou, “Intrinsic disorder prediction
using neural networks” Critical Assessment of protein Structure
Prediction 9, 2010, Pacific Grove, California
• T. Zhang, E. Faraggi and Y. Zhou, “Meta server approach for
intrinsic disorder prediction” Critical Assessment of protein Structure
Prediction 9, 2010, Pacific Grove, California
• E. Faraggi, Y. Yang, and Y. Zhou, “Using Neural Networks to Aid a Human in Predicting
Protein Structure” Critical Assessment of protein Structure Prediction 9, 2010, Pacific Grove, California
• J. Zhan, Y. Yang, E. Faraggi, Y. Liu, and Y. Zhou, “Enrichment of
destabilizing mutations and mutations of conserved residues in minor
allele frequency” Genetic Analysis Workshop, 2010, Boston, Massachusetts
• E. Faraggi, “Why hire me?” (Invited) Purdue University Structural Biology, 2011, West Lafayette, Indiana
• E. Faraggi, T. Zhang, Y. Zhou, A. K. Dunker and A. Kloczkowski,
"The role of age and disorder in protein-protein interactions" (Invited)
Mathematical and Computational Medicine, 2012, Xcaret, Mexico.
• E. Faraggi and A. Kloczkowski, "Whole Protein Native Fitness
Potentials" (Invited) Critical Assessment of protein Structure
Prediction 10, 2012, Gaeta, Italy.
• E. Faraggi, A. K. Dunder, J. Sussman and A. Kloczkowski, "On the
relationship between NMR and X-Ray derived protein structures" (Invited)
Weizmann Institute of Science, 2012, Rehovot, Israel.
• E. Faraggi and A. Kloczkowski, "Whole Protein Native Fitness
Potentials" American Physical Society, March Meeting, 2013, Baltimore,
Maryland.
• E. Faraggi, "Symmetrical charge-charge interactions in ionic
solutions and implications for cell division" American Physical Society,
March Meeting, 2013, Baltimore, Maryland.
• E. Faraggi and A. Kloczkowski, "Whole Protein Native Fitness
Potentials" (Conference Chair) Protein Folding, Dec. 2013, Cancun, Mexico.
• E. Faraggi, Y. Zhou, and A. Kloczkowski, "Accurate single-sequence
prediction of solvent accessible surface area. What can we learn?"
(Conference Chair) Protein Folding, Jul. 2014 Punta-Cana, Dominican
Republic.
• E. Faraggi, "Physically Meaningful Model of Cell Division and
Other Mathematical Constructs Related to Medicine" (Invited Speaker)
Mathematical Medicine, Dec. 2014 Playa Del Carmen, Mexico.
• Co-organized and co-chaired the 3rd International Conference on
Protein and RNA Structure prediction. Also gave the talk: E. Faraggi, A.
K. Dunder, J. Sussman and A. Kloczkowski, "On the
relationship between NMR and X-Ray derived protein structures" (Invited
Speaker) 2015, Punta Cana, Dominican Republic.
• E. Faraggi, A. K. Dunker, J. L. Sussman, and A. Kloczkowski, "On
the relationship between NMR and XRay derived structures" (Invited
Speaker), The 8th International Conference on Structural Genomics, June
2015, Rehovot, Israel.
• E. Faraggi "Using Deep Learning to Optimize UNRES", (Co-organized
and Co-chaired), The 1st International Conference on Conmputational
Genomic and Pr
oteomics, Oct. 2016, Guanacaste, Costa-Rica.
• The 12th Critical Assessment of Protein Structure Prediction (CASP12), (Invited), Dec. 2016, Gaeta, Italy.
• From Computational Biophysics to Systems Biology. Invited.
Co-chaired a session on machine learning and big data. 2017, Cincinnati,
Ohio.
• E. Faraggi, "Lindemann-like parameters and NMR disorder" (Invited
Speaker), 2nd International Conference on Computational Genomics and
Proteomics, 2017, Panama.
• E. Faraggi and A. Kloczkowski, "Fast and accurate prediction of
one-dimensional protein structural properties using a
Levenberg-Marquardt recursive neural network" (Co-organized and
Co-chaired), The 4th International Conference on Protein and RNA
Structure Prediction, Dec. 2017, Montego Bay, Jamaica.
• The 13th Critical Assessment of Protein Structure Prediction (CASP13), (Invited), Dec. 2018, Cancun, Mexico.
• E. Faraggi, "Machine Learning in Structural Biology and Other
Approaches" (Invited Speaker) The 4th Mathematical Medicine Conference,
Dec. 2018, Cancun, Mexico.
SOCIETIES •
American Physical Society • American
Association for the Advancement of Science -- former member •
Israeli Physical Society
TEACHING
• Physics 102N : E&M Lab, undergraduates, UT Austin.
• PS303 : Physical Science - Mechanics, undergraduates,
UT Austin • Revised Ph102N lab-manual with Roger
Bengtson -- lab supervising professor. UT Austin, Summer 1998.
• PS219, PHYS251 : Physics at IUPUI.
REFEREE DUTIES
• Computers in Biology and Medicine
• Symmetry
• Optics and Lasers in Engineering
• Journal of Theoretical Biology
• PLOS One
• Journal of Chemical Physics
• ETC
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